#!/bin/sh

# SGI

#PBS -V
#PBS -N SOAPdenovo2
#PBS -e SOAPdenovo2.err
#PBS -o SOAPdenovo2.out
#PBS -r n
#PBS -q high_mem
#PBS -l place=scatter
#PBS -l select=1:ncpus=1:host=n009
#PBS -l walltime=100:00:00

# shm, sock, ssm, rdma, rdssm
FABRIC=rdma
CORES=$[ `cat $PBS_NODEFILE | wc -l` ]
NODES=$[ `uniq $PBS_NODEFILE | wc -l` ]
cd $PBS_O_WORKDIR
printf "Current time is: `date`\n";
printf "Current PBS work directory is: $PBS_O_WORKDIR\n";
printf "Current PBS queue is: $PBS_O_QUEUE\n";
printf "Current PBS job ID is: $PBS_JOBID\n";
printf "Current PBS job name is: $PBS_JOBNAME\n";
printf "PBS stdout log is: $PBS_O_WORKDIR/sgi_mpitest.err\n";
printf "PBS stderr log is: $PBS_O_WORKDIR/sgi_mpitest.log\n";
printf "Fabric interconnect selected is: $FABRIC\n";
printf "This jobs will run on $CORES processors.\n";
. /etc/profile.d/modules.sh
module load mpt && echo "Successfully load modules"
TBEGIN=`echo "print time();" | perl`
printf "################################################\n";

/apps/SOAPdenovo-63mer all -s my.config -o graphOutput -K 63 -k 63 -p 32 -a 16 -d 1 -R -D 1 -M 1 -e 0 -z 9000000000 1>soap.log 2>soap.err

TEND=`echo "print time();" | perl`
printf "#################################################\n";