#!/bin/sh
# SGI
#PBS -V
#PBS -N BURIN_tree0214
#PBS -e BURIN_tree0214.err
#PBS -o BURIN_tree0214.out
#PBS -q low_mem 
#PBS -l place=scatter
#PBS -l select=1:ncpus=1:host=n008
##PBS -l walltime=100:00:00
# shm, sock, ssm, rdma, rdssm
FABRIC=rdma
CORES=$[ `cat $PBS_NODEFILE | wc -l` ]
NODES=$[ `uniq $PBS_NODEFILE | wc -l` ]
cd $PBS_O_WORKDIR   
 
printf "Current time is: `date`\n";
printf "Current PBS work directory is: $PBS_O_WORKDIR\n";
printf "Current PBS queue is: $PBS_O_QUEUE\n"; 
printf "Current PBS job ID is: $PBS_JOBID\n";
printf "Current PBS job name is: $PBS_JOBNAME\n";
printf "PBS stdout log is: $PBS_O_WORKDIR/sgi_mpitest.err\n";
printf "PBS stderr log is: $PBS_O_WORKDIR/sgi_mpitest.log\n";
printf "Fabric interconnect selected is: $FABRIC\n";
printf "This jobs will run on $CORES processors.\n";
. /etc/profile.d/modules.sh
module load mpt && echo "Successfully lodaded mpt module"
TBEGIN=`echo "print time();" | perl`
printf "MPI run command location is: `which mpirun`\n";
printf "################################################\n";
MPI_HOSTS=$(sort $PBS_NODEFILE | uniq -c | awk '{print $2 " " $1}' | tr "\n" "," | sed 's/.$//')
/apps/Rscript BDiversitree1_v3.r tree0214 diet_birds.txt musse --t 1 --i 2000000 --s 1000 > STD_tree0214.err
TEND=`echo "print time();" | perl`
printf "#################################################\n";
printf "+++ Job finished: `date`\n";
printf "+++ Job walltime: `expr $TEND - $TBEGIN`\n";
printf "#################################################\n";