Program:
POY (v4.1.2 to v5.1.2)

Comments:
Serial compilations or parallel usage with SGI's MPT

Source:
http://www.amnh.org/our-research/computational-sciences/research/projects/systematic-biology/poy

Cite:
Wheeler, W. C., Lucaroni, N., Hong, L., & Crowley, L. M. (2014). Cladistics POY version 5 : phylogenetic analysis using dynamic homologies under multiple optimality criteria, 1997, 1–8.
Varón, A., Vinh, L. S., & Wheeler, W. C. (2010). POY version 4: phylogenetic analysis using dynamic homologies. Cladistics, 26(1), 72–85. doi:10.1111/j.1096-0031.2009.00282.x
Wheeler, W., Aagesen, L., Arango, C., Faivovich, J., Grant, T., D’Haese, C., … Giribet, G. (2006). Dynamic homology and phylogenetic systematics: a unified approach using POY (p. 365). New York: American Museum of Natural History.
Wheeler, W. C. 2001a. Homology and the optimization of DNA sequence data. Cladistics 17: 3–11.
Wheeler, W. C. 2001b. Homology and DNA sequence data. In: The Character Concept in Evolutionary Biology. Wagner, G. P. (ed.). New York: Academic Press, pp. 303–318.

Building requirements:
1. zlib v1.2.8
	Download the source code from http://www.zlib.net/
	Compile with the following commands:
		$ ./configure
		$ make
		$ sudo make install
2. ocaml 3.12.1
	Download the source code from http://ocaml.org/
	Compile with the following programs:
		$ ./configure -cc "gcc -fPIC" -aspp "gcc -c -fPIC"
		$ make world && make bootstrap && make opt && make opt.opt && umask 022
		$ make install

Compilation:
You must compile POY from the /src subdirectory (remember to clean /src before building a new executable).
Use the followiong commands as an example:
	$./configure --prefix=/home/sgi/POY500/ --enable-interface=flat --enable-mpi --enable-likelihood CC=/opt/sgi/mpt/mpt-2.07/bin/mpicc
	$make
	$make install