Program: Bowtie v1.1.0 Comments: Source: http://bowtie-bio.sourceforge.net/index.shtml Cite: Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. Compilation notes: No compilation was required. Executables were extracted from bowtie-1.0.1-linux-x86_64.zip