Program:
ABySS v1.5.2

Comments:
Parallel usage with SGI's MPT

Source:
https://github.com/bcgsc/abyss

Cite:
Simpson, J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones, S. J. M., & Birol, I. (2009). ABySS: a parallel assembler for short read sequence data. Genome Research, 19(6), 1117–23. doi:10.1101/gr.089532.108

Compilation notes:
1. Download ABySS de novo sequence assembler from GitHub (http://www.bcgsc.ca/platform/bioinfo/software/abyss)
2. Unpack
3. From ABySS root directory, execute the following commands (paths may differ according to system and user preferences):
	$ sh autogen.sh
	$ ./configure --prefix=/home/sgi/ABYSS152/installation --with-mpi=/opt/sgi/mpt/mpt-2.07 --disable-openmp CC=/opt/sgi/mpt/mpt-2.07/bin/mpicc CFLAGS="-DMPI_NO_CPPBIND" CXXFLAGS="-DMPI_NO_CPPBIND"
	$ make
	$ make install
	$ make clean && rm config.h
	$ sudo mkdir /apps/ABYSS/
	$ sudo cp /home/sgi/ABYSS152/installation/* /apps/ABYSS/